#!/bin/bash

#### 05-27-16
#### This is for making batch bigwig load file. Do NOT use for regular bigwig in pipeline. ----------

DIR="/mnt/data1/www/html/Lymphoma_chrmatin"

make_bw(){
if [ "$#" -eq 2 ]; then
	CELL=$1  ## the cell line
	COLOR=$2
	for FILE in ${DIR}/*${CELL}*bw
	do
		PREFIX=$(basename $FILE .bw)
		echo ${PREFIX}
		NAME="\"${PREFIX}\""
		HEADER="track type=bigWig name=${NAME} description=${NAME} visibility=1 color=${COLOR} bigDataUrl=http://128.91.213.129/Lymphoma_chrmatin/${PREFIX}.bw"
	
		echo ${HEADER} >> load.txt
		echo " " >> load.txt
	done
else 
	echo "plese specify cell line and RBG color"
fi
}
#### blak tracks for FL 
make_bw "FL" "0,0,0"

#### blue tracks for MCL
make_bw "MCL" "0,0,153"

#### red tracks for DLBCL and HGB
make_bw "DLBCL" "153,0,0"
make_bw "HGB" "153,0,0"

#### green tracks for SLL
make_bw "SLL" "0,153,0"